In and around Bodegraven there are lots of places that offer good accommodation. Below a few suggestions.
Tulip Inn Bodegraven
http://www.tulipinnbodegraven.nl/
Goudseweg 32, Bodegraven
+31-172-650003
Hotel Rust Even
http://www.rusteven.nl
Dammekant 107, Bodegraven
+31-172-612 532
B&B J. van den Bos
Dammekant 111, Bodegraven
+31-172-612883
B&B Het Tuinhuis
Meije 110a, Meije
+31-172-685427
B&B Pax Tibi
http://www.pax-tibi.nl/
Middelburgseweg 11, Reeuwijk
+31-182-301260
Hotel Campanile
http://www.campanile-gouda.nl
Kampenringweg 39/41, Gouda
+31-018- 2535555
But Leiden has also quite some hotels in the middle of the centre, near the railway station. In just about 20 minutes you can travel from Leiden to Bodegraven station. Brouwerij de Molen is only a 5 minute walk from the railway station. This way you can combine a trip to beautiful Leiden with a visit to the Borefts Beer Festival.